Pan-NS3 protease inhibitors of hepatitis C virus based on an R3-elongated pyrazinone scaffold

Eur J Med Chem. 2018 Mar 25:148:453-464. doi: 10.1016/j.ejmech.2018.02.032. Epub 2018 Feb 13.

Abstract

Herein, we present the design and synthesis of 2(1H)-pyrazinone based HCV NS3 protease inhibitors and show that elongated R3 urea substituents were associated with increased inhibitory potencies over several NS3 protein variants. The inhibitors are believed to rely on β-sheet mimicking hydrogen bonds which are similar over different genotypes and current drug resistant variants and correspond to the β-sheet interactions of the natural peptide substrate. Inhibitor 36, for example, with a urea substituent including a cyclic imide showed balanced nanomolar inhibitory potencies against genotype 1a, both wild-type (Ki = 30 nM) and R155K (Ki = 2 nM), and genotype 3a (Ki = 5 nM).

Keywords: Genotype 3; Hepatitis C; NS3; Pyrazinone; Resistance.

MeSH terms

  • Antiviral Agents / chemistry*
  • Antiviral Agents / pharmacology
  • Genotype
  • Hepacivirus / enzymology
  • Humans
  • Hydrogen Bonding
  • Protein Conformation, beta-Strand
  • Pyrazines / chemistry*
  • Viral Nonstructural Proteins / antagonists & inhibitors*

Substances

  • Antiviral Agents
  • NS3 protein, hepatitis C virus
  • Pyrazines
  • Viral Nonstructural Proteins